Variant report

Variant	rs55964334
Chromosome Location	chr6:161371504-161371505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161369420..161372191-chr6:161411916..161414445,2	MCF-7	breast:
2	chr6:161369702..161372936-chr6:161374234..161376186,3	K562	blood:
3	chr6:161366897..161368711-chr6:161371406..161373943,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12173735	1.00[EUR][1000 genomes]
rs1247336	0.81[ASN][1000 genomes]
rs55704622	1.00[AMR][1000 genomes]
rs73782381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355326	1.00[EUR][1000 genomes]
rs9355863	1.00[EUR][1000 genomes]
rs9355864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv349125	chr6:161364230-161373035	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161361600-161372200	Weak transcription	Esophagus	oesophagus
2	chr6:161365200-161372200	Weak transcription	Pancreas	Pancrea
3	chr6:161365400-161374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:161369400-161373400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:161369800-161372200	Weak transcription	Placenta	Placenta
6	chr6:161370200-161371600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:161370200-161371800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:161370200-161371800	Enhancers	HMEC	breast
9	chr6:161370200-161372800	Enhancers	NHEK	skin
10	chr6:161370200-161373800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:161370200-161373800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:161370600-161371800	Enhancers	HSMMtube	muscle
13	chr6:161370600-161372600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:161370800-161371800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:161370800-161371800	Enhancers	Colon Smooth Muscle	Colon
16	chr6:161370800-161371800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:161370800-161371800	Enhancers	Fetal Lung	lung
18	chr6:161370800-161371800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:161370800-161371800	Enhancers	Osteobl	bone
20	chr6:161370800-161372200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:161370800-161372200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:161371000-161371600	Enhancers	NH-A	brain
23	chr6:161371000-161371800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:161371000-161371800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:161371000-161371800	Enhancers	Fetal Heart	heart
26	chr6:161371000-161371800	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:161371000-161372200	Enhancers	Stomach Mucosa	stomach
28	chr6:161371200-161371600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:161371200-161371800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:161371400-161371600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links