Variant report

Variant	rs73782381
Chromosome Location	chr6:161370763-161370764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12173735	1.00[EUR][1000 genomes]
rs1247336	0.81[ASN][1000 genomes]
rs55704622	1.00[AMR][1000 genomes]
rs55964334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9355326	1.00[EUR][1000 genomes]
rs9355863	1.00[EUR][1000 genomes]
rs9355864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv349125	chr6:161364230-161373035	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161361600-161372200	Weak transcription	Esophagus	oesophagus
2	chr6:161365200-161372200	Weak transcription	Pancreas	Pancrea
3	chr6:161365400-161374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:161369400-161373400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:161369800-161372200	Weak transcription	Placenta	Placenta
6	chr6:161370200-161370800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:161370200-161371200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:161370200-161371600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:161370200-161371800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:161370200-161371800	Enhancers	HMEC	breast
11	chr6:161370200-161372800	Enhancers	NHEK	skin
12	chr6:161370200-161373800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:161370200-161373800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:161370600-161371400	Enhancers	HSMM	muscle
15	chr6:161370600-161371800	Enhancers	HSMMtube	muscle
16	chr6:161370600-161372600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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