Variant report

Variant	rs559652055
Chromosome Location	chr4:172394467-172394468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv881556	chr4:172205108-172491284	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv880978	chr4:172315768-172405095	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv880557	chr4:172315768-172458600	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv881360	chr4:172315768-172491284	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv4604	chr4:172360664-172425786	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1815655	chr4:172367540-172432296	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1822088	chr4:172367540-172432296	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv1825189	chr4:172367540-172432296	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1831472	chr4:172367540-172432296	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1843827	chr4:172367540-172432296	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv596185	chr4:172376220-172494233	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	nsv881422	chr4:172377609-172486332	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	nsv596192	chr4:172383439-172481191	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
19	nsv596193	chr4:172383439-172492327	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	nsv596194	chr4:172388728-172481191	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172394000-172395000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links