Variant report
| Variant | rs55966031 |
|---|---|
| Chromosome Location | chr4:125443322-125443323 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125442062..125443590-chr4:125447572..125450020,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD50-1 | chr4:125443262-125443359 | XLOC_004064 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10010113 | 0.85[AFR][1000 genomes] |
| rs10020964 | 0.91[AFR][1000 genomes] |
| rs17008248 | 0.87[AFR][1000 genomes] |
| rs17008284 | 0.94[AFR][1000 genomes] |
| rs188740 | 1.00[ASN][1000 genomes] |
| rs28567538 | 0.91[AFR][1000 genomes] |
| rs312491 | 1.00[ASN][1000 genomes] |
| rs312495 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs312505 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs312507 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs312508 | 1.00[ASN][1000 genomes] |
| rs57392145 | 0.91[AFR][1000 genomes] |
| rs61034856 | 0.87[AFR][1000 genomes] |
| rs6831789 | 0.91[AFR][1000 genomes] |
| rs7689902 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868977 | chr4:124841128-125550637 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv879880 | chr4:125174817-125494547 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2760890 | chr4:125273456-125466931 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879881 | chr4:125280852-125448288 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv521095 | chr4:125439666-125444404 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
