Variant report
| Variant | rs57392145 |
|---|---|
| Chromosome Location | chr4:125418429-125418430 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10010113 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10020964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10471025 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17008248 | 0.95[AFR][1000 genomes] |
| rs17008284 | 0.86[AFR][1000 genomes] |
| rs17008322 | 1.00[EUR][1000 genomes] |
| rs28567538 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28592204 | 1.00[EUR][1000 genomes] |
| rs28668989 | 1.00[EUR][1000 genomes] |
| rs28730460 | 1.00[EUR][1000 genomes] |
| rs55874952 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55966031 | 0.91[AFR][1000 genomes] |
| rs60792792 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61034856 | 0.95[AFR][1000 genomes] |
| rs61255787 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6831789 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73845356 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845360 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845362 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845363 | 1.00[EUR][1000 genomes] |
| rs73845366 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845371 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868977 | chr4:124841128-125550637 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv879880 | chr4:125174817-125494547 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2760890 | chr4:125273456-125466931 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879881 | chr4:125280852-125448288 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125414400-125420200 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr4:125415400-125420200 | Weak transcription | Fetal Lung | lung |
