Variant report

Variant	rs73845362
Chromosome Location	chr4:125446811-125446812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10010113	1.00[EUR][1000 genomes]
rs10020964	1.00[AMR][1000 genomes]
rs10471025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008322	1.00[EUR][1000 genomes]
rs28567538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28592204	1.00[EUR][1000 genomes]
rs28668989	1.00[EUR][1000 genomes]
rs28730460	1.00[EUR][1000 genomes]
rs55874952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57392145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60792792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61255787	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6831789	1.00[AMR][1000 genomes]
rs73845356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845363	1.00[EUR][1000 genomes]
rs73845366	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125446400-125447000	Enhancers	Lung	lung
2	chr4:125446600-125448800	Enhancers	HUVEC	blood vessel
3	chr4:125446800-125447000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:125446800-125448400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:125446800-125448800	Enhancers	Fetal Stomach	stomach
6	chr4:125446800-125451400	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links