Variant report

Variant	rs559675648
Chromosome Location	chr13:76111168-76111169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:76102775..76109881-chr13:76110381..76113047,9	MCF-7	breast:
2	chr13:76055919..76057695-chr13:76110507..76112437,2	MCF-7	breast:
3	chr13:76101020..76103303-chr13:76108939..76111291,2	K562	blood:
4	chr13:76109717..76113590-chr13:76122029..76126081,5	MCF-7	breast:
5	chr13:76109113..76111805-chr13:76112674..76114626,2	K562	blood:
6	chr13:76055248..76057886-chr13:76110224..76112780,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136111	Chromatin interaction
ENSG00000261553	Chromatin interaction
ENSG00000188243	Chromatin interaction
ENSG00000118939	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3326553	chr13:76106251-76120849	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3346687	chr13:76106451-76115149	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3363843	chr13:76106551-76113949	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv14404	chr13:76107773-76119573	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv2596575	chr13:76109159-76111338	Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1833250	chr13:76109534-76117768	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv442676	chr13:76109534-76117768	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2760289	chr13:76109536-76117768	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv514711	chr13:76111087-76115423	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76095800-76111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:76096600-76111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:76097000-76111600	Weak transcription	Spleen	Spleen
4	chr13:76097800-76111200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:76098000-76111200	Weak transcription	Aorta	Aorta
6	chr13:76098800-76111400	Weak transcription	Esophagus	oesophagus
7	chr13:76100000-76111200	Weak transcription	Ovary	ovary
8	chr13:76105000-76111200	Weak transcription	Stomach Mucosa	stomach
9	chr13:76109200-76111400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:76109600-76111400	Weak transcription	Left Ventricle	heart
11	chr13:76109800-76111200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr13:76109800-76111200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:76109800-76111400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:76109800-76111400	Weak transcription	Gastric	stomach
15	chr13:76109800-76111400	Weak transcription	Lung	lung
16	chr13:76110000-76111400	Enhancers	Small Intestine	intestine
17	chr13:76110200-76111200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr13:76110200-76111200	Enhancers	Colon Smooth Muscle	Colon
19	chr13:76110200-76111400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:76110400-76111200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:76110400-76111400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr13:76110400-76111400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr13:76110400-76111400	Flanking Active TSS	Osteobl	bone
24	chr13:76110400-76111600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:76110400-76112800	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr13:76110600-76111200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr13:76110600-76111200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:76110600-76111200	Flanking Active TSS	Fetal Brain Male	brain
29	chr13:76110600-76111200	Flanking Active TSS	Fetal Brain Female	brain
30	chr13:76110600-76111200	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr13:76110600-76111400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:76110600-76111400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr13:76110600-76111400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr13:76110600-76111400	Flanking Active TSS	Brain Germinal Matrix	brain
35	chr13:76110600-76111400	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr13:76110600-76111400	Enhancers	Pancreas	Pancrea
37	chr13:76110600-76111400	Flanking Active TSS	HepG2	liver
38	chr13:76110600-76111600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr13:76110600-76111800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr13:76110600-76111800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:76110600-76111800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr13:76110600-76112600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr13:76110800-76111200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr13:76110800-76111200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr13:76110800-76111200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:76110800-76111200	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr13:76110800-76111200	Flanking Active TSS	HSMM	muscle
48	chr13:76110800-76111200	Flanking Active TSS	NH-A	brain
49	chr13:76110800-76111200	Flanking Active TSS	NHLF	lung
50	chr13:76110800-76111400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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