Variant report

Variant	rs55967640
Chromosome Location	chr11:16971910-16971911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16970711..16972970-chr11:16979069..16980668,2	K562	blood:
2	chr11:16971884..16974479-chr11:17097308..17099759,2	K562	blood:
3	chr11:16970516..16973330-chr11:16980967..16983342,2	K562	blood:
4	chr11:16968895..16971125-chr11:16971193..16973951,2	MCF-7	breast:
5	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184669	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000201403	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56760592	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57046173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60138646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60844970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60996031	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61708002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947282	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951117	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16964200-16981400	Weak transcription	Gastric	stomach
4	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:16968000-16972400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:16968000-16977800	Weak transcription	Pancreas	Pancrea
7	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
8	chr11:16968200-16972400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:16968400-16975200	Weak transcription	Fetal Kidney	kidney
10	chr11:16968400-16978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:16968400-16980000	Weak transcription	Liver	Liver
12	chr11:16968600-16975200	Weak transcription	HepG2	liver
13	chr11:16968600-16975400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:16968800-16972000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:16968800-16977800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:16968800-16978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16971000-16972000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:16971200-16979400	Enhancers	Stomach Mucosa	stomach
20	chr11:16971400-16972400	Enhancers	Fetal Intestine Large	intestine
21	chr11:16971800-16972000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr11:16971800-16972000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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