Variant report

Variant	rs55967683
Chromosome Location	chr1:85251801-85251802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11161453	0.86[EUR][1000 genomes]
rs12057661	0.86[EUR][1000 genomes]
rs12062402	0.86[EUR][1000 genomes]
rs12062585	0.86[EUR][1000 genomes]
rs12065415	0.86[EUR][1000 genomes]
rs56285432	0.85[EUR][1000 genomes]
rs57327395	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716980	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716991	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324137	0.86[EUR][1000 genomes]
rs9324138	0.86[EUR][1000 genomes]
rs9324139	0.86[EUR][1000 genomes]
rs9724727	0.85[EUR][1000 genomes]
rs9726164	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9728120	0.86[EUR][1000 genomes]
rs9729198	0.86[EUR][1000 genomes]
rs9729820	0.86[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85250400-85252000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:85250400-85252000	Enhancers	Rectal Smooth Muscle	rectum
4	chr1:85250800-85252400	Enhancers	Fetal Lung	lung
5	chr1:85251000-85252000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr1:85251200-85261600	Weak transcription	Right Atrium	heart
7	chr1:85251400-85255000	Weak transcription	NHEK	skin
8	chr1:85251800-85254800	Weak transcription	HMEC	breast
9	chr1:85251800-85263400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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