Variant report

Variant	rs55967803
Chromosome Location	chr1:175065520-175065521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175047887..175050312-chr1:175064283..175066550,2	K562	blood:
2	chr1:175063814..175066744-chr1:175083988..175085835,3	K562	blood:
3	chr1:175058365..175061494-chr1:175062662..175065562,3	K562	blood:
4	chr1:175065484..175067807-chr1:175139999..175142698,2	K562	blood:
5	chr1:175058271..175062583-chr1:175062770..175067990,6	K562	blood:
6	chr1:175061981..175063618-chr1:175064520..175066767,2	MCF-7	breast:
7	chr1:175047862..175049387-chr1:175064972..175066550,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11577778	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11582121	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583313	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11583729	0.82[ASN][1000 genomes]
rs12059398	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12065394	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12068402	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12068982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076122	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087791	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17302688	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374668	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2269647	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55808408	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56226643	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59822966	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61541139	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650986	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv3609	chr1:175046412-175094406	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175062400-175071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:175063400-175068200	Weak transcription	Right Atrium	heart
3	chr1:175065000-175065800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:175065000-175065800	Enhancers	HepG2	liver
5	chr1:175065400-175065800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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