Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175033728..175036275-chr1:175037285..175039259,2	MCF-7	breast:
2	chr1:175037331..175039889-chr1:175047402..175050144,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11577778	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11578942	0.81[EUR][1000 genomes]
rs11578961	0.82[EUR][1000 genomes]
rs11582121	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12059398	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12065394	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12068402	0.99[EUR][1000 genomes]
rs12068982	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12076122	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16847779	0.82[EUR][1000 genomes]
rs17302688	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17302950	1.00[ASN][1000 genomes]
rs17374668	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17374873	1.00[ASN][1000 genomes]
rs2269647	0.99[EUR][1000 genomes]
rs55808408	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55967803	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56226643	0.97[EUR][1000 genomes]
rs59822966	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61541139	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6665471	0.82[EUR][1000 genomes]
rs6695255	0.81[EUR][1000 genomes]
rs6703193	0.82[EUR][1000 genomes]
rs9650986	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1012861	chr1:175021780-175063160	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv535210	chr1:175021780-175063160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175036800-175041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:175037200-175038600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:175037200-175040200	Weak transcription	Fetal Stomach	stomach
4	chr1:175037200-175040600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:175037200-175041000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:175037200-175041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:175037200-175041000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:175037200-175041400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:175037400-175039800	Weak transcription	Adipose Nuclei	Adipose
10	chr1:175037600-175038000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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