Variant report

Variant	rs17374873
Chromosome Location	chr1:175102781-175102782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175101804..175105264-chr1:175106246..175109650,3	K562	blood:
2	chr1:175101221..175103304-chr1:175107956..175109650,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11583313	1.00[ASN][1000 genomes]
rs17302950	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662518	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175097200-175103000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:175097800-175103400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:175099200-175102800	Weak transcription	Stomach Mucosa	stomach
4	chr1:175099200-175103200	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:175099400-175103000	Weak transcription	Spleen	Spleen
6	chr1:175099800-175103000	Weak transcription	Lung	lung
7	chr1:175100000-175105400	Weak transcription	Liver	Liver
8	chr1:175100000-175105800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:175100200-175103200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:175100400-175103000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:175100400-175105200	Enhancers	GM12878-XiMat	blood
12	chr1:175101000-175102800	Enhancers	Fetal Lung	lung
13	chr1:175101200-175103000	Enhancers	NHDF-Ad	bronchial
14	chr1:175101200-175103200	Enhancers	Aorta	Aorta
15	chr1:175101600-175102800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr1:175102000-175102800	Weak transcription	Right Atrium	heart
17	chr1:175102000-175103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:175102000-175103000	Weak transcription	NH-A	brain
19	chr1:175102000-175107600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:175102400-175103000	Weak transcription	Right Ventricle	heart
21	chr1:175102600-175105000	Weak transcription	Stomach Smooth Muscle	stomach

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