Variant report

Variant	rs6662518
Chromosome Location	chr1:175285287-175285288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912966	1.00[ASN][1000 genomes]
rs11800933	1.00[ASN][1000 genomes]
rs16848218	1.00[ASN][1000 genomes]
rs16848281	1.00[ASN][1000 genomes]
rs16848304	1.00[ASN][1000 genomes]
rs17302950	1.00[ASN][1000 genomes]
rs17374873	1.00[ASN][1000 genomes]
rs17375910	1.00[ASN][1000 genomes]
rs61805066	1.00[ASN][1000 genomes]
rs61806379	1.00[ASN][1000 genomes]
rs61806380	1.00[ASN][1000 genomes]
rs61808381	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175277600-175288200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr1:175283200-175320600	Weak transcription	Brain Germinal Matrix	brain
3	chr1:175283600-175288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:175283800-175286200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:175283800-175286600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:175283800-175286600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:175283800-175286600	Weak transcription	Pancreas	Pancrea
8	chr1:175283800-175286800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:175283800-175287200	Weak transcription	Right Atrium	heart
10	chr1:175283800-175287800	Weak transcription	Left Ventricle	heart
11	chr1:175283800-175287800	Weak transcription	Psoas Muscle	Psoas
12	chr1:175283800-175287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:175283800-175288200	Weak transcription	HMEC	breast
14	chr1:175284000-175287600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:175284200-175287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:175284200-175343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:175285200-175285800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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