Variant report

Variant	rs559695567
Chromosome Location	chr3:17757336-17757337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17752527..17754058-chr3:17756146..17757899,2	K562	blood:
2	chr3:17753992..17758136-chr3:17779432..17782585,3	K562	blood:
3	chr3:17756543..17761197-chr3:17782233..17784855,6	MCF-7	breast:
4	chr3:17748459..17751783-chr3:17756414..17759059,3	K562	blood:
5	chr3:17755313..17757600-chr3:17763097..17765739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv980010	chr3:17756625-17760941	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17752000-17762000	Weak transcription	Right Ventricle	heart
2	chr3:17753800-17758200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr3:17755000-17757600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:17755000-17757800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
5	chr3:17755200-17757600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
6	chr3:17755200-17757800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr3:17755200-17757800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:17755200-17757800	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr3:17755200-17758000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:17755200-17758000	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr3:17755200-17759800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:17755200-17771800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:17755400-17757400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:17755400-17757400	ZNF genes & repeats	Fetal Lung	lung
15	chr3:17755400-17757600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:17755400-17757600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr3:17755400-17757800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:17755400-17758000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:17755400-17758000	ZNF genes & repeats	Dnd41	blood
20	chr3:17755400-17758400	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr3:17755400-17781600	Weak transcription	Pancreas	Pancrea
22	chr3:17755600-17757400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:17755600-17757400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr3:17755600-17757400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr3:17755600-17757400	ZNF genes & repeats	Placenta	Placenta
26	chr3:17755600-17757600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:17755600-17757600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:17755600-17757600	ZNF genes & repeats	Fetal Stomach	stomach
29	chr3:17755600-17757800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
30	chr3:17755600-17757800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr3:17755600-17757800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:17755600-17757800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
33	chr3:17755600-17758000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr3:17755600-17758000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
35	chr3:17755800-17757400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:17755800-17757600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr3:17755800-17757600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
38	chr3:17755800-17758000	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr3:17756000-17759000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:17756200-17757800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:17756200-17758400	Weak transcription	HSMMtube	muscle
42	chr3:17756200-17774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:17756200-17782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:17756400-17757400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:17756400-17757400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:17756400-17757600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:17756400-17757600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:17756400-17758200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:17756400-17758800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:17756400-17759400	Weak transcription	Right Atrium	heart

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