Variant report

Variant	rs55977086
Chromosome Location	chr7:48598815-48598816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17132372	0.82[AFR][1000 genomes]
rs17132432	0.87[AFR][1000 genomes]
rs1918591	1.00[AMR][1000 genomes]
rs58385535	0.83[AFR][1000 genomes]
rs60449227	1.00[AMR][1000 genomes]
rs61346153	0.83[AFR][1000 genomes]
rs61451174	0.83[AFR][1000 genomes]
rs73694648	0.83[AFR][1000 genomes]
rs73694650	0.83[AFR][1000 genomes]
rs73694653	0.87[AFR][1000 genomes]
rs73694656	0.86[AFR][1000 genomes]
rs73694659	0.87[AFR][1000 genomes]
rs73694669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694698	1.00[AMR][1000 genomes]
rs7793028	0.87[AFR][1000 genomes]
rs7799752	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv275242	chr7:48592013-48605608	Weak transcription Enhancers Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48589200-48602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48594200-48599400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:48598400-48599000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links