Variant report

Variant	rs55977862
Chromosome Location	chr3:133676950-133676951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56106050	1.00[EUR][1000 genomes]
rs56851733	1.00[EUR][1000 genomes]
rs57398983	1.00[EUR][1000 genomes]
rs58343304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73861266	1.00[EUR][1000 genomes]
rs73861267	1.00[EUR][1000 genomes]
rs73861268	1.00[EUR][1000 genomes]
rs73861270	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133663800-133694800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:133664000-133705400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:133664800-133713000	Weak transcription	Gastric	stomach
4	chr3:133668400-133685600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:133670200-133680200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:133670600-133687000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:133672600-133681400	Weak transcription	Esophagus	oesophagus
8	chr3:133673800-133678000	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:133674000-133677400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:133674000-133677800	Enhancers	Fetal Muscle Leg	muscle
11	chr3:133674000-133678400	Enhancers	Spleen	Spleen
12	chr3:133674000-133681400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:133674600-133677400	Enhancers	Lung	lung
14	chr3:133675000-133677000	Enhancers	Adipose Nuclei	Adipose
15	chr3:133675200-133678000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:133675400-133677400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:133675400-133682200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:133675400-133698800	Weak transcription	Right Ventricle	heart
19	chr3:133676000-133677200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:133676000-133677800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr3:133676200-133678000	Enhancers	Fetal Thymus	thymus
22	chr3:133676200-133683800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:133676400-133677000	Enhancers	HUVEC	blood vessel
24	chr3:133676400-133685200	Weak transcription	Right Atrium	heart
25	chr3:133676600-133678000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:133676600-133678000	Enhancers	HSMM	muscle
27	chr3:133676800-133677600	Enhancers	Psoas Muscle	Psoas

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