Variant report

Variant	rs73861266
Chromosome Location	chr3:133661919-133661920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133650603..133653685-chr3:133661707..133664077,5	K562	blood:
2	chr3:133656338..133659550-chr3:133661023..133664144,3	K562	blood:
3	chr3:133655319..133659400-chr3:133660671..133664345,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55977862	1.00[EUR][1000 genomes]
rs56106050	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56851733	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57398983	1.00[EUR][1000 genomes]
rs73861267	1.00[EUR][1000 genomes]
rs73861268	1.00[EUR][1000 genomes]
rs73861270	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133650200-133662600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:133651800-133663400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:133654000-133662600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:133654400-133662200	Weak transcription	Fetal Intestine Small	intestine
5	chr3:133654400-133662600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:133654400-133662600	Weak transcription	Small Intestine	intestine
7	chr3:133654600-133662600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:133655600-133662600	Weak transcription	Fetal Kidney	kidney
9	chr3:133656800-133662600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:133657000-133662200	Weak transcription	NHDF-Ad	bronchial
11	chr3:133657000-133662600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:133657400-133662600	Weak transcription	Left Ventricle	heart
13	chr3:133657400-133663000	Weak transcription	Aorta	Aorta
14	chr3:133658600-133662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:133659200-133665400	Enhancers	Fetal Muscle Leg	muscle
16	chr3:133659800-133662600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:133659800-133662600	Enhancers	Hela-S3	cervix
18	chr3:133659800-133662800	Enhancers	HUVEC	blood vessel
19	chr3:133659800-133665400	Enhancers	Fetal Lung	lung
20	chr3:133659800-133665600	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:133659800-133665600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr3:133660000-133663400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:133660200-133662000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr3:133660200-133662200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr3:133660200-133663400	Enhancers	NHLF	lung
26	chr3:133660200-133665000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:133660200-133665000	Enhancers	Fetal Muscle Trunk	muscle
28	chr3:133660400-133662800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:133660400-133663600	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:133660600-133662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:133660600-133664000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:133660800-133662000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:133660800-133662200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:133660800-133662600	Weak transcription	HSMMtube	muscle
35	chr3:133660800-133676400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr3:133661000-133662000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr3:133661000-133665400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:133661000-133665800	Enhancers	Fetal Thymus	thymus
39	chr3:133661000-133667600	Enhancers	Psoas Muscle	Psoas
40	chr3:133661200-133662000	Flanking Active TSS	Dnd41	blood
41	chr3:133661200-133662200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:133661200-133662200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:133661400-133662000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr3:133661400-133662000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr3:133661400-133662000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
46	chr3:133661400-133662200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr3:133661400-133662200	Strong transcription	Fetal Stomach	stomach
48	chr3:133661400-133662400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr3:133661400-133662800	Genic enhancers	Lung	lung
50	chr3:133661400-133664400	Enhancers	Placenta Amnion	Placenta Amnion

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