Variant report

Variant	rs55985534
Chromosome Location	chr3:144489280-144489281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12374020	0.82[EUR][1000 genomes]
rs1401038	0.82[EUR][1000 genomes]
rs55770269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55861404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56841126	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57139281	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873574	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73873575	1.00[EUR][1000 genomes]
rs73873577	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv999196	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv536755	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144483400-144489400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:144483600-144489400	Weak transcription	Brain Substantia Nigra	brain
3	chr3:144487800-144492200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:144488000-144491000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:144488400-144489400	Enhancers	HUVEC	blood vessel
6	chr3:144489000-144489600	Enhancers	HSMM	muscle
7	chr3:144489000-144490400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:144489000-144491000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:144489000-144491000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:144489200-144489400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:144489200-144489400	Enhancers	Psoas Muscle	Psoas
12	chr3:144489200-144489600	Enhancers	NHDF-Ad	bronchial
13	chr3:144489200-144491000	Enhancers	HSMMtube	muscle
14	chr3:144489200-144491400	Enhancers	Brain Angular Gyrus	brain
15	chr3:144489200-144491400	Enhancers	Brain Anterior Caudate	brain
16	chr3:144489200-144491600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:144489200-144491600	Enhancers	Brain Hippocampus Middle	brain
18	chr3:144489200-144492400	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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