Variant report

Variant	rs73873575
Chromosome Location	chr3:144466554-144466555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12374020	0.82[EUR][1000 genomes]
rs1401038	0.82[EUR][1000 genomes]
rs55770269	1.00[EUR][1000 genomes]
rs55861404	1.00[EUR][1000 genomes]
rs55985534	1.00[EUR][1000 genomes]
rs56841126	1.00[EUR][1000 genomes]
rs57139281	1.00[EUR][1000 genomes]
rs73873574	1.00[EUR][1000 genomes]
rs73873577	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144465800-144467000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:144465800-144467000	Enhancers	Brain Substantia Nigra	brain
3	chr3:144466000-144466800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr3:144466000-144467600	Enhancers	Fetal Intestine Small	intestine
5	chr3:144466200-144467000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:144466200-144467000	Enhancers	Fetal Lung	lung
7	chr3:144466200-144467200	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:144466400-144467400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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