Variant report
| Variant | rs55989541 |
|---|---|
| Chromosome Location | chr10:22575005-22575006 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000269897 | Chromatin interaction |
| ENSG00000148444 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs12254097 | 1.00[EUR][1000 genomes] |
| rs16922378 | 1.00[EUR][1000 genomes] |
| rs56763182 | 1.00[EUR][1000 genomes] |
| rs58604203 | 1.00[EUR][1000 genomes] |
| rs59543181 | 1.00[EUR][1000 genomes] |
| rs60632833 | 1.00[EUR][1000 genomes] |
| rs61086333 | 1.00[EUR][1000 genomes] |
| rs7079151 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825292 | chr10:22560347-22642200 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
