Variant report

Variant	rs55996051
Chromosome Location	chr19:51502656-51502657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2066975	0.82[ASN][1000 genomes]
rs28434175	0.85[ASN][1000 genomes]
rs7245714	0.98[ASN][1000 genomes]
rs73936105	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:51499800-51503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:51502200-51503200	Enhancers	HMEC	breast
5	chr19:51502200-51503400	Genic enhancers	NHEK	skin
6	chr19:51502400-51503400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:51502600-51503200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links