Variant report

Variant	rs7245714
Chromosome Location	chr19:51502386-51502387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1007755	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10421703	1.00[EUR][1000 genomes]
rs10422661	1.00[EUR][1000 genomes]
rs10423943	1.00[EUR][1000 genomes]
rs2066975	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2075692	1.00[EUR][1000 genomes]
rs28434175	0.83[ASN][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs55996051	0.98[ASN][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs59941188	1.00[EUR][1000 genomes]
rs60865290	1.00[EUR][1000 genomes]
rs61437908	1.00[EUR][1000 genomes]
rs73597589	1.00[EUR][1000 genomes]
rs73597600	1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	1.00[EUR][1000 genomes]
rs73936105	1.00[ASN][1000 genomes]
rs73936112	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:51499800-51503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:51502000-51502400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr19:51502200-51502600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51502200-51503200	Enhancers	HMEC	breast
7	chr19:51502200-51503400	Genic enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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