Variant report

Variant	rs73597589
Chromosome Location	chr19:51499567-51499568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1007755	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10421703	1.00[EUR][1000 genomes]
rs10423943	1.00[EUR][1000 genomes]
rs2075692	1.00[EUR][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs59941188	1.00[EUR][1000 genomes]
rs60865290	1.00[EUR][1000 genomes]
rs61437908	1.00[EUR][1000 genomes]
rs7245714	1.00[EUR][1000 genomes]
rs73597600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	1.00[EUR][1000 genomes]
rs73936112	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058277	chr19:51488544-51509847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51496600-51502000	Weak transcription	NHEK	skin
2	chr19:51496600-51503000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:51498000-51502200	Weak transcription	HMEC	breast
4	chr19:51498000-51503000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51499200-51500400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:51499200-51501600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51499400-51499800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links