Variant report

Variant	rs58768535
Chromosome Location	chr19:51595865-51595866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:51516525..51520117-chr19:51595809..51598615,3	MCF-7	breast:
2	chr19:51547682..51551012-chr19:51594065..51598640,4	MCF-7	breast:
3	chr19:51567940..51570583-chr19:51594310..51596058,2	K562	blood:
4	chr19:51529066..51530568-chr19:51595749..51597951,2	MCF-7	breast:
5	chr19:51595594..51598122-chr19:51600484..51602210,2	MCF-7	breast:
6	chr19:51594561..51596843-chr19:51608971..51610702,2	MCF-7	breast:
7	chr19:51594685..51597003-chr19:51868134..51869717,2	MCF-7	breast:
8	chr19:51298843..51300590-chr19:51594747..51596538,2	K562	blood:
9	chr19:51595306..51599591-chr19:51610050..51613197,5	K562	blood:
10	chr19:51521032..51525811-chr19:51595249..51599173,7	MCF-7	breast:
11	chr19:51529110..51531029-chr19:51594612..51597566,2	MCF-7	breast:
12	chr19:51522850..51527724-chr19:51594893..51601573,10	MCF-7	breast:
13	chr19:51571883..51577686-chr19:51593894..51597603,10	MCF-7	breast:
14	chr19:51572190..51574304-chr19:51595106..51597426,2	MCF-7	breast:
15	chr19:51306131..51308302-chr19:51595703..51598630,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000129451	Chromatin interaction
ENSG00000167747	Chromatin interaction
ENSG00000268739	Chromatin interaction
ENSG00000142544	Chromatin interaction
ENSG00000268520	Chromatin interaction
ENSG00000167757	Chromatin interaction
ENSG00000167759	Chromatin interaction
ENSG00000105379	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1007755	1.00[EUR][1000 genomes]
rs10403860	1.00[EUR][1000 genomes]
rs10405869	1.00[EUR][1000 genomes]
rs10407410	1.00[EUR][1000 genomes]
rs10416208	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10418167	1.00[EUR][1000 genomes]
rs10419749	1.00[EUR][1000 genomes]
rs10421703	1.00[EUR][1000 genomes]
rs10422661	1.00[EUR][1000 genomes]
rs10423943	1.00[EUR][1000 genomes]
rs11882250	1.00[EUR][1000 genomes]
rs2075692	1.00[EUR][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs56662071	1.00[EUR][1000 genomes]
rs57033225	1.00[EUR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs59520043	1.00[EUR][1000 genomes]
rs59941188	1.00[EUR][1000 genomes]
rs60865290	1.00[EUR][1000 genomes]
rs61437908	1.00[EUR][1000 genomes]
rs7245714	1.00[EUR][1000 genomes]
rs7246875	1.00[EUR][1000 genomes]
rs7253323	1.00[EUR][1000 genomes]
rs7253328	1.00[EUR][1000 genomes]
rs7255167	1.00[EUR][1000 genomes]
rs7255602	1.00[EUR][1000 genomes]
rs73597589	1.00[EUR][1000 genomes]
rs73597600	1.00[EUR][1000 genomes]
rs73612266	1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	1.00[EUR][1000 genomes]
rs73932868	1.00[EUR][1000 genomes]
rs73936112	1.00[EUR][1000 genomes]
rs8105500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv912292	chr19:51587643-51628529	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51583000-51604200	Weak transcription	Left Ventricle	heart
2	chr19:51583200-51597000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:51587200-51604400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr19:51588600-51598000	Weak transcription	Ovary	ovary
5	chr19:51590000-51600200	Weak transcription	Spleen	Spleen
6	chr19:51590200-51601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:51590400-51597400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr19:51592600-51605400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr19:51593400-51610200	Weak transcription	HSMMtube	muscle
10	chr19:51594200-51598200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr19:51594200-51605600	Weak transcription	HSMM	muscle
12	chr19:51594400-51597000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:51594400-51598000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr19:51594600-51606000	Weak transcription	K562	blood
15	chr19:51595200-51596200	Enhancers	NHEK	skin
16	chr19:51595200-51597800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr19:51595400-51596600	Enhancers	Gastric	stomach
18	chr19:51595400-51597400	Enhancers	Esophagus	oesophagus
19	chr19:51595600-51596200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr19:51595600-51596600	Enhancers	Pancreas	Pancrea
21	chr19:51595600-51597400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr19:51595800-51596000	Enhancers	Duodenum Mucosa	Duodenum
23	chr19:51595800-51597400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr19:51595800-51597400	Weak transcription	HMEC	breast
25	chr19:51595800-51597600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:51595800-51598600	Enhancers	A549	lung
27	chr19:51595800-51599800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr19:51595800-51600000	Weak transcription	Lung	lung
29	chr19:51595800-51600600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:51595800-51601000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr19:51595800-51601000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr19:51595800-51601200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr19:51595800-51602200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr19:51595800-51605800	Weak transcription	Colonic Mucosa	Colon

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