Variant report

Variant	rs10418167
Chromosome Location	chr19:51695932-51695933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1007755	1.00[EUR][1000 genomes]
rs10403860	1.00[EUR][1000 genomes]
rs10405869	1.00[EUR][1000 genomes]
rs10407410	1.00[EUR][1000 genomes]
rs10416208	1.00[EUR][1000 genomes]
rs10416327	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419749	1.00[EUR][1000 genomes]
rs10421703	1.00[EUR][1000 genomes]
rs10422661	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423943	1.00[EUR][1000 genomes]
rs11882250	1.00[EUR][1000 genomes]
rs2075692	1.00[EUR][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs56662071	1.00[EUR][1000 genomes]
rs57033225	1.00[EUR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs59520043	1.00[EUR][1000 genomes]
rs59941188	1.00[EUR][1000 genomes]
rs60865290	1.00[EUR][1000 genomes]
rs61437908	1.00[EUR][1000 genomes]
rs7246875	1.00[EUR][1000 genomes]
rs7253323	1.00[EUR][1000 genomes]
rs7253328	1.00[EUR][1000 genomes]
rs7255167	1.00[EUR][1000 genomes]
rs7255602	1.00[EUR][1000 genomes]
rs73612266	1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	1.00[EUR][1000 genomes]
rs73932868	1.00[EUR][1000 genomes]
rs73936112	1.00[EUR][1000 genomes]
rs8105500	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv962987	chr19:51692435-51697218	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51695000-51696000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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