Variant report

Variant	rs10407410
Chromosome Location	chr19:51698771-51698772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESRRA	chr19:51697566-51698957	GM12878	blood:	n/a	chr19:51698581-51698595 chr19:51698580-51698596

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51686150..51688287-chr19:51697466..51699885,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VSIG10L-1	chr19:51698424-51698796	NONHSAT067419

Variant related genes	Relation type
SIGLEC21P	TF binding region
ENSG00000268336	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10403860	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10404545	0.84[AMR][1000 genomes]
rs10405869	1.00[EUR][1000 genomes]
rs10416208	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10418167	1.00[EUR][1000 genomes]
rs10419749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10421703	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422661	1.00[EUR][1000 genomes]
rs10423943	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424324	0.84[AMR][1000 genomes]
rs11882250	1.00[EUR][1000 genomes]
rs2075692	1.00[EUR][1000 genomes]
rs28629968	0.84[AMR][1000 genomes]
rs28693721	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56662071	1.00[EUR][1000 genomes]
rs57033225	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs59520043	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59941188	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60865290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61437908	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246875	1.00[EUR][1000 genomes]
rs7252364	0.84[AMR][1000 genomes]
rs7253323	1.00[EUR][1000 genomes]
rs7253328	1.00[EUR][1000 genomes]
rs7255167	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7255602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73610293	0.84[AMR][1000 genomes]
rs73612266	1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932868	1.00[EUR][1000 genomes]
rs73936112	1.00[EUR][1000 genomes]
rs8105500	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51696200-51702000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51696400-51705400	Weak transcription	Right Atrium	heart
3	chr19:51697600-51699000	Enhancers	K562	blood
4	chr19:51697800-51698800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:51698600-51698800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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