Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10405869	1.00[EUR][1000 genomes]
rs10407410	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416208	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10418167	1.00[EUR][1000 genomes]
rs10419749	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10421703	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422661	1.00[EUR][1000 genomes]
rs10423943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882250	1.00[EUR][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs56662071	1.00[EUR][1000 genomes]
rs57033225	1.00[EUR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs59520043	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59941188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60865290	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61437908	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246875	1.00[EUR][1000 genomes]
rs7253323	1.00[EUR][1000 genomes]
rs7253328	1.00[EUR][1000 genomes]
rs7255167	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7255602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612266	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932868	1.00[EUR][1000 genomes]
rs8105500	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv3327113	chr19:51714613-51728152	Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51715200-51719600	Weak transcription	Hela-S3	cervix
2	chr19:51715200-51721600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr19:51715400-51729200	Weak transcription	Spleen	Spleen
4	chr19:51718000-51721200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr19:51718200-51721200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr19:51718400-51719400	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr19:51718600-51719200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:51718600-51719400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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