Variant report

Variant	rs11882250
Chromosome Location	chr19:51729594-51729595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10403860	1.00[EUR][1000 genomes]
rs10405869	1.00[EUR][1000 genomes]
rs10407410	1.00[EUR][1000 genomes]
rs10414234	1.00[TSI][hapmap]
rs10416208	1.00[EUR][1000 genomes]
rs10416327	1.00[EUR][1000 genomes]
rs10418167	1.00[EUR][1000 genomes]
rs10418346	0.83[AMR][1000 genomes]
rs10419749	1.00[EUR][1000 genomes]
rs10421703	1.00[EUR][1000 genomes]
rs10422661	1.00[EUR][1000 genomes]
rs10423943	1.00[EUR][1000 genomes]
rs10425668	0.83[AMR][1000 genomes]
rs10426210	0.83[AMR][1000 genomes]
rs13344455	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes]
rs16982575	0.83[AMR][1000 genomes]
rs16982584	1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2063825	0.83[AMR][1000 genomes]
rs28625921	0.83[AMR][1000 genomes]
rs28693721	1.00[EUR][1000 genomes]
rs28765496	0.91[AMR][1000 genomes]
rs56662071	1.00[EUR][1000 genomes]
rs57033225	1.00[EUR][1000 genomes]
rs57490406	0.83[AMR][1000 genomes]
rs57511882	1.00[EUR][1000 genomes]
rs58664594	1.00[EUR][1000 genomes]
rs58768535	1.00[EUR][1000 genomes]
rs58981829	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59520043	1.00[EUR][1000 genomes]
rs59941188	1.00[EUR][1000 genomes]
rs60865290	1.00[EUR][1000 genomes]
rs61437908	1.00[EUR][1000 genomes]
rs7246875	1.00[EUR][1000 genomes]
rs7252160	1.00[TSI][hapmap]
rs7252722	1.00[TSI][hapmap]
rs7253323	1.00[EUR][1000 genomes]
rs7253328	1.00[EUR][1000 genomes]
rs7255167	1.00[EUR][1000 genomes]
rs7255602	1.00[EUR][1000 genomes]
rs7260005	0.83[AMR][1000 genomes]
rs73612266	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612698	1.00[EUR][1000 genomes]
rs73612702	1.00[EUR][1000 genomes]
rs73932868	1.00[EUR][1000 genomes]
rs8105500	1.00[EUR][1000 genomes]
rs9304710	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51727400-51729800	Flanking Active TSS	K562	blood
2	chr19:51727600-51732800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr19:51727800-51729600	Active TSS	Hela-S3	cervix
4	chr19:51728000-51729600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr19:51728000-51729600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:51728000-51729600	Enhancers	Fetal Thymus	thymus
7	chr19:51728200-51729600	Active TSS	Duodenum Mucosa	Duodenum
8	chr19:51728200-51730000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:51728200-51731400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr19:51728400-51729600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
11	chr19:51728400-51729800	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr19:51728800-51730000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr19:51729200-51729600	ZNF genes & repeats	Spleen	Spleen
14	chr19:51729400-51729600	Enhancers	Primary B cells from cord blood	blood
15	chr19:51729400-51729600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood

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