Variant report
| Variant | rs7260005 |
|---|---|
| Chromosome Location | chr19:51764778-51764779 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:51763432..51765236-chr19:51768339..51771020,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10404032 | 1.00[EUR][1000 genomes] |
| rs10407368 | 1.00[EUR][1000 genomes] |
| rs10407913 | 1.00[EUR][1000 genomes] |
| rs10408172 | 1.00[EUR][1000 genomes] |
| rs10414234 | 1.00[EUR][1000 genomes] |
| rs10416077 | 1.00[EUR][1000 genomes] |
| rs10416406 | 1.00[EUR][1000 genomes] |
| rs10418346 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10425668 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10426210 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11882250 | 0.83[AMR][1000 genomes] |
| rs13344455 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16982575 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16982584 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2063825 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28625921 | 0.83[AMR][1000 genomes] |
| rs28765496 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4330015 | 1.00[EUR][1000 genomes] |
| rs55932809 | 1.00[EUR][1000 genomes] |
| rs56663899 | 1.00[EUR][1000 genomes] |
| rs57490406 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58981829 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6509522 | 1.00[EUR][1000 genomes] |
| rs9304710 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066308 | chr19:51680133-52103974 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
| 2 | nsv544049 | chr19:51680133-52103974 | Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
| 3 | nsv518134 | chr19:51750238-51765953 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv1060026 | chr19:51751123-51773175 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:51762600-51772600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr19:51762800-51767200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
