Variant report

Variant	rs28625921
Chromosome Location	chr19:51756224-51756225
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10404032	0.92[AFR][1000 genomes]
rs10418346	0.83[AMR][1000 genomes]
rs10425668	0.83[AMR][1000 genomes]
rs10426210	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11882250	0.83[AMR][1000 genomes]
rs13344455	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16982575	0.83[AMR][1000 genomes]
rs16982584	0.83[AMR][1000 genomes]
rs2063825	0.83[AMR][1000 genomes]
rs28765496	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57490406	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58981829	0.83[AMR][1000 genomes]
rs7260005	0.83[AMR][1000 genomes]
rs73612266	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv519982	chr19:51750238-51758127	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv518134	chr19:51750238-51765953	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1060026	chr19:51751123-51773175	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51753200-51756400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr19:51755600-51757400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr19:51755600-51757400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:51755600-51757600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:51755800-51757400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr19:51756000-51757600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:51756200-51757600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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