Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10404032	1.00[EUR][1000 genomes]
rs10407368	1.00[EUR][1000 genomes]
rs10407913	1.00[EUR][1000 genomes]
rs10408172	1.00[EUR][1000 genomes]
rs10414234	1.00[EUR][1000 genomes]
rs10416077	1.00[EUR][1000 genomes]
rs10418346	1.00[EUR][1000 genomes]
rs10425668	1.00[EUR][1000 genomes]
rs10426210	1.00[EUR][1000 genomes]
rs13344455	1.00[EUR][1000 genomes]
rs16982575	1.00[EUR][1000 genomes]
rs16982584	1.00[EUR][1000 genomes]
rs2063825	1.00[EUR][1000 genomes]
rs28765496	1.00[EUR][1000 genomes]
rs4330015	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55932809	1.00[EUR][1000 genomes]
rs56663899	1.00[EUR][1000 genomes]
rs57490406	1.00[EUR][1000 genomes]
rs58981829	1.00[EUR][1000 genomes]
rs6509522	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256512	0.85[YRI][hapmap]
rs7260005	1.00[EUR][1000 genomes]
rs9304710	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv518134	chr19:51750238-51765953	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1060026	chr19:51751123-51773175	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51759400-51762800	Enhancers	Primary hematopoietic stem cells	blood
2	chr19:51759400-51762800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr19:51761000-51761800	Enhancers	K562	blood
4	chr19:51761000-51762200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:51761200-51762400	Enhancers	Fetal Thymus	thymus
6	chr19:51761200-51762800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:51761400-51762000	Enhancers	GM12878-XiMat	blood
8	chr19:51761400-51762400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr19:51761400-51762600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:51761600-51761800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr19:51761600-51762000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr19:51761600-51762000	Enhancers	Primary B cells from peripheral blood	blood
13	chr19:51761600-51762000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr19:51761600-51762200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:51761600-51762200	Enhancers	HSMMtube	muscle
16	chr19:51761600-51762400	Enhancers	H9 Cell Line	embryonic stem cell

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