Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10404032	1.00[EUR][1000 genomes]
rs10407368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408172	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416077	1.00[EUR][1000 genomes]
rs10416406	1.00[EUR][1000 genomes]
rs10418346	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10425668	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10426210	1.00[EUR][1000 genomes]
rs11882250	1.00[TSI][hapmap]
rs13344455	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16982575	1.00[EUR][1000 genomes]
rs16982584	0.81[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2063825	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28765496	1.00[EUR][1000 genomes]
rs4330015	1.00[EUR][1000 genomes]
rs55932809	1.00[EUR][1000 genomes]
rs56663899	1.00[EUR][1000 genomes]
rs57490406	1.00[EUR][1000 genomes]
rs58981829	1.00[EUR][1000 genomes]
rs6509522	1.00[EUR][1000 genomes]
rs7252160	1.00[TSI][hapmap]
rs7252722	1.00[TSI][hapmap]
rs7260005	1.00[EUR][1000 genomes]
rs9304710	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10414234	MYBPC2	cis	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51731000-51748800	Weak transcription	K562	blood
2	chr19:51739000-51748800	Weak transcription	Adipose Nuclei	Adipose
3	chr19:51742400-51745400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr19:51743000-51748800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr19:51744000-51745000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr19:51744000-51748800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:51744200-51745600	Genic enhancers	Monocytes-CD14+_RO01746	blood
8	chr19:51744200-51745800	Genic enhancers	Primary monocytes fromperipheralblood	blood
9	chr19:51744200-51745800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:51744600-51745200	Enhancers	HepG2	liver
11	chr19:51744600-51745400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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