Variant report

Variant	rs559969849
Chromosome Location	chr7:66121010-66121011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:66116638..66119241-chr7:66120094..66122874,2	K562	blood:
2	chr7:66119236..66121485-chr7:66204940..66206778,2	K562	blood:
3	chr7:66119490..66121348-chr7:66145844..66148158,2	K562	blood:
4	chr7:66055738..66058439-chr7:66119494..66121209,2	MCF-7	breast:
5	chr7:66052648..66055044-chr7:66119940..66122450,2	K562	blood:
6	chr7:66120659..66123648-chr7:66152144..66153650,2	K562	blood:
7	chr7:66118152..66121117-chr7:66145225..66147766,4	MCF-7	breast:
8	chr7:66118570..66121104-chr7:66386256..66388029,2	K562	blood:
9	chr7:66055703..66058887-chr7:66117840..66121190,6	MCF-7	breast:
10	chr7:66091844..66094640-chr7:66118336..66122170,5	MCF-7	breast:
11	chr7:66119671..66121376-chr7:66145999..66148457,2	MCF-7	breast:
12	chr7:66091898..66097382-chr7:66117985..66122507,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000154710	Chromatin interaction
ENSG00000106609	Chromatin interaction
ENSG00000272831	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000232559	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv2761151	chr7:66095738-66138285	Flanking Active TSS Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3496297	chr7:66099491-66136579	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3496298	chr7:66099491-66136579	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3486481	chr7:66101377-66137773	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv3486482	chr7:66101377-66137773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv3509629	chr7:66101713-66137585	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3509631	chr7:66101713-66137585	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv967445	chr7:66112743-66133589	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv970517	chr7:66120041-66121468	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66118200-66121200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:66118200-66121200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:66118200-66121200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:66118200-66121200	Active TSS	NHDF-Ad	bronchial
5	chr7:66118400-66121200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:66118400-66121400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:66118600-66121200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:66118600-66121200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:66118600-66121200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:66118600-66121400	Active TSS	HSMM	muscle
11	chr7:66118600-66121600	Active TSS	HSMMtube	muscle
12	chr7:66118600-66121600	Active TSS	NHLF	lung
13	chr7:66118800-66121200	Active TSS	Muscle Satellite Cultured Cells	--
14	chr7:66118800-66121200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:66119000-66121600	Active TSS	Stomach Smooth Muscle	stomach
16	chr7:66120200-66121200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:66120200-66121200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:66120200-66121400	Enhancers	Spleen	Spleen
19	chr7:66120200-66121400	Flanking Active TSS	Dnd41	blood
20	chr7:66120400-66121200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr7:66120400-66127400	Weak transcription	Lung	lung
22	chr7:66120400-66127600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:66120600-66121200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:66120600-66121200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:66120600-66121200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr7:66120600-66121200	Weak transcription	Aorta	Aorta
27	chr7:66120600-66121200	Enhancers	Brain Angular Gyrus	brain
28	chr7:66120600-66121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:66120600-66121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:66120600-66121400	Enhancers	Pancreas	Pancrea
31	chr7:66120600-66121400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr7:66120600-66121600	Enhancers	Primary B cells from cord blood	blood
33	chr7:66120600-66121600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr7:66120600-66121600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr7:66120600-66121600	Enhancers	Liver	Liver
36	chr7:66120600-66121600	Enhancers	Esophagus	oesophagus
37	chr7:66120600-66121600	Enhancers	Placenta	Placenta
38	chr7:66120600-66121800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:66120600-66127600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:66120600-66127600	Weak transcription	Fetal Brain Male	brain
41	chr7:66120600-66127600	Weak transcription	Fetal Kidney	kidney
42	chr7:66120600-66127600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:66120600-66127600	Weak transcription	Thymus	Thymus
44	chr7:66120600-66129600	Weak transcription	Brain Substantia Nigra	brain
45	chr7:66120600-66129800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:66120600-66132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr7:66120600-66146000	Weak transcription	Primary T cells from cord blood	blood
48	chr7:66120600-66146200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:66120800-66121200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:66120800-66121200	Weak transcription	Left Ventricle	heart

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