Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54540510..54543369-chr15:54545272..54547110,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28514513	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55637972	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55804420	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55814452	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55858902	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55859336	1.00[ASN][1000 genomes]
rs55864624	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55953107	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56084389	1.00[ASN][1000 genomes]
rs56116100	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56283511	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62010054	0.90[ASN][1000 genomes]
rs62010057	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62010058	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62011965	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011966	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011967	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011988	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011989	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011990	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011991	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62011996	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8033973	0.97[ASN][1000 genomes]
rs9806325	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54542600-54549800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:54546000-54547000	Strong transcription	Fetal Lung	lung

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