Variant report
| Variant | rs62011966 |
|---|---|
| Chromosome Location | chr15:54561866-54561867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs28514513 | 0.97[ASN][1000 genomes] |
| rs55637972 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55804420 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55814452 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55858902 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55859336 | 1.00[ASN][1000 genomes] |
| rs55864624 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55953107 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56002016 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56084389 | 1.00[ASN][1000 genomes] |
| rs56116100 | 0.85[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56283511 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62010054 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62010057 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62010058 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62011965 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011967 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011988 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011989 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011990 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011991 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62011996 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74013563 | 0.82[AFR][1000 genomes] |
| rs74013565 | 0.82[AFR][1000 genomes] |
| rs74013590 | 0.85[AFR][1000 genomes] |
| rs8033973 | 0.97[ASN][1000 genomes] |
| rs9806325 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9806530 | 0.82[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052235 | chr15:53677524-54618723 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv542388 | chr15:53677524-54618723 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv1845471 | chr15:54556063-54685463 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |
