Variant report
| Variant | rs56007975 |
|---|---|
| Chromosome Location | chr1:168959920-168959921 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs55855418 | 1.00[AFR][1000 genomes] |
| rs59367850 | 1.00[AFR][1000 genomes] |
| rs74121803 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74121804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74121805 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74121807 | 1.00[AFR][1000 genomes] |
| rs74123069 | 1.00[AMR][1000 genomes] |
| rs74123080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74123081 | 1.00[AFR][1000 genomes] |
| rs74124405 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869415 | chr1:168467284-169153863 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
