Variant report

Variant	rs74123080
Chromosome Location	chr1:168952270-168952271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55855418	1.00[AFR][1000 genomes]
rs56007975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59367850	1.00[AFR][1000 genomes]
rs74121803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121807	1.00[AFR][1000 genomes]
rs74123069	1.00[AMR][1000 genomes]
rs74123081	1.00[AFR][1000 genomes]
rs74124405	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168949800-168959200	Weak transcription	Stomach Mucosa	stomach
2	chr1:168952000-168952600	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links