Variant report

Variant	rs56012427
Chromosome Location	chr11:26689352-26689353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501059	0.83[EUR][1000 genomes]
rs10501060	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10501062	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10835042	0.83[EUR][1000 genomes]
rs10835046	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10835047	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11600634	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12278931	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12279760	0.83[EUR][1000 genomes]
rs12292104	0.91[EUR][1000 genomes]
rs12574098	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12577083	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12577354	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3802754	0.93[EUR][1000 genomes]
rs3802756	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58857364	0.81[AMR][1000 genomes]
rs7112752	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7117596	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932456	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26691400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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