Variant report

Variant	rs7117596
Chromosome Location	chr11:26671961-26671962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26318438..26319350-chr11:26670793..26671982,7	MCF-7	breast:
2	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10501059	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10501060	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs10501062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10835042	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835046	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835047	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029649	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11600634	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11601992	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11602453	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11603245	0.93[ASN][1000 genomes]
rs11603582	0.93[ASN][1000 genomes]
rs11604868	0.93[ASN][1000 genomes]
rs11605160	0.94[ASN][1000 genomes]
rs11606202	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11606235	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11606418	0.85[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11606579	0.92[ASN][1000 genomes]
rs12278931	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12279760	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12292104	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295638	0.90[JPT][hapmap]
rs12574098	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575470	0.94[ASN][1000 genomes]
rs12577083	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577224	0.95[JPT][hapmap]
rs12577354	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916005	0.93[ASN][1000 genomes]
rs293989	0.85[CHB][hapmap]
rs3802754	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3802756	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41468744	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs421694	0.90[CHB][hapmap]
rs4382858	0.95[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs4418758	0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs4418759	0.95[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs4619108	0.83[AFR][1000 genomes]
rs55870165	0.94[ASN][1000 genomes]
rs56012427	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57160661	0.94[ASN][1000 genomes]
rs58302588	0.94[ASN][1000 genomes]
rs58449812	0.94[ASN][1000 genomes]
rs58629434	0.94[ASN][1000 genomes]
rs58631362	0.94[ASN][1000 genomes]
rs58857364	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59747833	0.93[ASN][1000 genomes]
rs60530378	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60600602	0.94[ASN][1000 genomes]
rs61580147	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7101361	0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs7101811	0.95[JPT][hapmap];0.95[YRI][hapmap]
rs7102014	0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs7102068	0.95[JPT][hapmap];0.90[YRI][hapmap]
rs7112752	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114378	0.95[JPT][hapmap];0.95[YRI][hapmap]
rs7116077	0.86[ASN][1000 genomes]
rs7126479	0.91[ASN][1000 genomes]
rs7128122	0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7128239	0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7128384	0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs7128823	0.95[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs71449133	0.84[AFR][1000 genomes]
rs7932456	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7932573	0.95[JPT][hapmap];0.95[YRI][hapmap]
rs7945253	0.86[ASN][1000 genomes]
rs7945560	0.85[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26671600-26672000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:26671600-26672000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26671600-26672000	Active TSS	NHDF-Ad	bronchial

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