Variant report

Variant	rs60530378
Chromosome Location	chr11:26646596-26646597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10501059	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10501060	0.89[EUR][1000 genomes]
rs10501062	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10835042	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835046	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835047	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029649	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600634	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601992	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11602453	0.99[ASN][1000 genomes]
rs11603245	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11603582	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11604760	0.83[AFR][1000 genomes]
rs11604868	0.99[ASN][1000 genomes]
rs11605160	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606202	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606235	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606418	0.97[ASN][1000 genomes]
rs11606579	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278931	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12279760	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12292104	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574098	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12575470	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577083	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577224	0.83[AFR][1000 genomes]
rs12577354	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16916005	0.99[ASN][1000 genomes]
rs3802754	0.91[ASN][1000 genomes]
rs3802756	0.91[ASN][1000 genomes]
rs41468744	0.92[ASN][1000 genomes]
rs421694	0.81[ASN][1000 genomes]
rs55870165	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57160661	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58302588	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58449812	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58629434	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58631362	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58857364	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59747833	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60600602	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61580147	0.81[ASN][1000 genomes]
rs7112752	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7116077	0.92[ASN][1000 genomes]
rs7117596	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126479	0.97[ASN][1000 genomes]
rs7932456	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7945253	0.92[ASN][1000 genomes]
rs7945560	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26644800-26647800	Weak transcription	NHDF-Ad	bronchial
2	chr11:26645000-26648000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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