Variant report

Variant	rs560147762
Chromosome Location	chr7:106931021-106931022
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106928239..106930553-chr7:106930960..106933126,2	MCF-7	breast:
2	chr7:106923986..106926392-chr7:106929216..106932117,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1024903	chr7:106897237-106965091	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034707	chr7:106897237-106966215	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1033064	chr7:106903099-106949640	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1797664	chr7:106930295-106964433	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
2	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
3	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
6	chr7:106888600-106931600	Weak transcription	Dnd41	blood
7	chr7:106888800-106932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:106888800-106933400	Weak transcription	Fetal Stomach	stomach
9	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:106889000-106933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:106889000-106934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:106890800-106945600	Weak transcription	Aorta	Aorta
15	chr7:106899200-106933600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:106904800-106959800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:106907000-106933600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:106908200-106933600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr7:106908600-106933000	Weak transcription	Liver	Liver
20	chr7:106909000-106932200	Weak transcription	NHEK	skin
21	chr7:106909000-106968600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:106910200-106946400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:106911000-106932000	Weak transcription	K562	blood
24	chr7:106911000-106933600	Weak transcription	Lung	lung
25	chr7:106911000-106964200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:106911800-106946000	Weak transcription	Fetal Intestine Small	intestine
27	chr7:106912400-106934200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr7:106915200-106953400	Weak transcription	Left Ventricle	heart
29	chr7:106918000-106936000	Weak transcription	HSMMtube	muscle
30	chr7:106918000-106939000	Weak transcription	GM12878-XiMat	blood
31	chr7:106918600-106963800	Weak transcription	HSMM	muscle
32	chr7:106921200-106936400	Weak transcription	HUVEC	blood vessel
33	chr7:106921400-106946000	Weak transcription	Fetal Thymus	thymus
34	chr7:106922200-106934200	Weak transcription	Brain Angular Gyrus	brain
35	chr7:106923000-106933600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:106923000-106933800	Weak transcription	Spleen	Spleen
37	chr7:106923000-106965800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:106923200-106935200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:106923600-106933400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr7:106923800-106999400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr7:106924200-106933400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr7:106924200-106933800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:106924200-106937400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:106925600-106959800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:106926800-106943000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:106927800-106933400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:106927800-106933600	Weak transcription	Adipose Nuclei	Adipose
48	chr7:106927800-106937600	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:106928000-106942800	Weak transcription	Fetal Heart	heart
50	chr7:106928000-106958800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links