Variant report

Variant	rs56021099
Chromosome Location	chr21:17455313-17455314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17454496..17455374-chr21:17702457..17703273,3	MCF-7	breast:
2	chr21:17266810..17267465-chr21:17454846..17455467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215386	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11909150	1.00[EUR][1000 genomes]
rs11911258	1.00[EUR][1000 genomes]
rs28477395	1.00[EUR][1000 genomes]
rs28538277	1.00[EUR][1000 genomes]
rs28636884	1.00[EUR][1000 genomes]
rs58713964	1.00[EUR][1000 genomes]
rs59051627	1.00[EUR][1000 genomes]
rs60107374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60601677	1.00[EUR][1000 genomes]
rs61478315	1.00[EUR][1000 genomes]
rs73354430	1.00[EUR][1000 genomes]
rs73354435	1.00[EUR][1000 genomes]
rs73367130	1.00[EUR][1000 genomes]
rs73894733	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9979037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2830060	chr21:17400916-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv527854	chr21:17400916-17459507	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1851038	chr21:17412144-17488119	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17445200-17457200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr21:17446200-17481000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:17446800-17472200	Weak transcription	Fetal Brain Female	brain
4	chr21:17452800-17457200	Weak transcription	NH-A	brain
5	chr21:17452800-17457400	Weak transcription	HSMMtube	muscle
6	chr21:17453800-17455400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr21:17454000-17455400	Enhancers	Osteobl	bone
8	chr21:17454400-17455600	Enhancers	Brain Substantia Nigra	brain
9	chr21:17454800-17455400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr21:17454800-17456400	Weak transcription	NHDF-Ad	bronchial
11	chr21:17454800-17457000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr21:17454800-17457200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:17454800-17457200	Weak transcription	Brain Hippocampus Middle	brain
14	chr21:17454800-17457800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr21:17454800-17466000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr21:17455000-17455400	Enhancers	Brain Anterior Caudate	brain
17	chr21:17455000-17456800	Weak transcription	Brain Angular Gyrus	brain
18	chr21:17455000-17457000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr21:17455000-17457000	Weak transcription	Adipose Nuclei	Adipose
20	chr21:17455000-17457000	Enhancers	Brain Cingulate Gyrus	brain
21	chr21:17455200-17456200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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