Variant report

Variant	rs73894733
Chromosome Location	chr21:17454293-17454294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11909150	1.00[EUR][1000 genomes]
rs11911258	1.00[EUR][1000 genomes]
rs28477395	1.00[EUR][1000 genomes]
rs28538277	1.00[EUR][1000 genomes]
rs28636884	1.00[EUR][1000 genomes]
rs56021099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58713964	1.00[EUR][1000 genomes]
rs59051627	1.00[EUR][1000 genomes]
rs60107374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60601677	1.00[EUR][1000 genomes]
rs61478315	1.00[EUR][1000 genomes]
rs73354430	1.00[EUR][1000 genomes]
rs73354435	1.00[EUR][1000 genomes]
rs73367130	1.00[EUR][1000 genomes]
rs73894735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9979037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913414	chr21:17383785-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2830060	chr21:17400916-17459507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv527854	chr21:17400916-17459507	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1851038	chr21:17412144-17488119	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17445200-17457200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr21:17446200-17481000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:17446800-17472200	Weak transcription	Fetal Brain Female	brain
4	chr21:17452200-17454400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr21:17452400-17454800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr21:17452600-17454400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr21:17452600-17455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr21:17452800-17454400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr21:17452800-17454400	Weak transcription	NHDF-Ad	bronchial
10	chr21:17452800-17457200	Weak transcription	NH-A	brain
11	chr21:17452800-17457400	Weak transcription	HSMMtube	muscle
12	chr21:17453000-17454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr21:17453800-17454600	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr21:17453800-17454800	Enhancers	A549	lung
15	chr21:17453800-17455000	Active TSS	Brain Angular Gyrus	brain
16	chr21:17453800-17455400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr21:17454000-17454400	Enhancers	Brain Anterior Caudate	brain
18	chr21:17454000-17454400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr21:17454000-17454400	Enhancers	HUVEC	blood vessel
20	chr21:17454000-17455400	Enhancers	Osteobl	bone
21	chr21:17454200-17454400	Enhancers	Brain Germinal Matrix	brain
22	chr21:17454200-17454400	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr21:17454200-17454600	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links