Variant report

Variant	rs56026054
Chromosome Location	chr2:7171020-7171021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7158767..7160822-chr2:7170212..7171959,2	MCF-7	breast:
2	chr2:7155706..7158054-chr2:7170057..7171880,2	MCF-7	breast:

rs_ID	r²[population]
rs16865879	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4669127	1.00[ASN][1000 genomes]
rs56155927	1.00[ASN][1000 genomes]
rs61494548	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7148200-7172600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:7148800-7171400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:7151200-7185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:7154000-7183200	Strong transcription	Primary T cells from cord blood	blood
6	chr2:7154000-7190200	Strong transcription	Dnd41	blood
7	chr2:7154600-7174800	Weak transcription	Primary B cells from cord blood	blood
8	chr2:7154600-7184200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:7155000-7171400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:7155200-7182000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr2:7155600-7178800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:7157000-7177600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:7157000-7179200	Weak transcription	Aorta	Aorta
14	chr2:7157200-7185200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:7158200-7173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:7158400-7173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:7158600-7173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:7159000-7181000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:7159600-7180600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:7162000-7171600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:7162800-7171400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:7163000-7171400	Weak transcription	Stomach Mucosa	stomach
26	chr2:7163200-7177400	Weak transcription	Fetal Brain Male	brain
27	chr2:7164000-7171200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:7164000-7171600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:7164000-7177600	Weak transcription	NHDF-Ad	bronchial
30	chr2:7164000-7178000	Weak transcription	K562	blood
31	chr2:7164600-7171200	Weak transcription	Fetal Intestine Large	intestine
32	chr2:7164600-7182200	Weak transcription	Small Intestine	intestine
33	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr2:7165200-7171400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr2:7165400-7171200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr2:7165400-7171200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr2:7165400-7171600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr2:7165400-7179200	Weak transcription	Colonic Mucosa	Colon
39	chr2:7166200-7171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr2:7166800-7173600	Strong transcription	Thymus	Thymus
41	chr2:7166800-7176400	Strong transcription	Brain Germinal Matrix	brain
42	chr2:7166800-7177800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:7167000-7173800	Strong transcription	Fetal Thymus	thymus
44	chr2:7167000-7177800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr2:7167400-7171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:7167400-7176600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr2:7167800-7171200	Weak transcription	Colon Smooth Muscle	Colon
49	chr2:7167800-7171400	Weak transcription	Gastric	stomach
50	chr2:7167800-7172800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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