Variant report

Variant	rs61494548
Chromosome Location	chr2:7185545-7185546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7176590..7179422-chr2:7184639..7187139,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10171085	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10173029	0.81[AMR][1000 genomes]
rs13388387	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16865879	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56026054	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6746899	0.81[AMR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:7154000-7190200	Strong transcription	Dnd41	blood
3	chr2:7158200-7188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:7158400-7186800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:7159400-7186800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:7164800-7189000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:7170800-7187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:7172200-7186400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:7173600-7189200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:7173800-7188600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:7175400-7187600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:7175800-7187400	Weak transcription	Fetal Intestine Small	intestine
17	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
18	chr2:7180200-7188800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:7180600-7186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr2:7181000-7185800	Weak transcription	Fetal Thymus	thymus
21	chr2:7181000-7186600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr2:7181000-7188600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr2:7181200-7185600	Weak transcription	Placenta	Placenta
24	chr2:7181600-7188200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:7181800-7190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:7182000-7189800	Weak transcription	Brain Germinal Matrix	brain
27	chr2:7182000-7191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:7182000-7194000	Weak transcription	Ovary	ovary
29	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
31	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:7182800-7186800	Weak transcription	Fetal Lung	lung
35	chr2:7182800-7187800	Weak transcription	Brain Angular Gyrus	brain
36	chr2:7182800-7188000	Weak transcription	Left Ventricle	heart
37	chr2:7182800-7188000	Weak transcription	HepG2	liver
38	chr2:7183000-7185800	Weak transcription	Esophagus	oesophagus
39	chr2:7183000-7188200	Weak transcription	Lung	lung
40	chr2:7183000-7194000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr2:7184400-7186200	Strong transcription	Fetal Muscle Leg	muscle
42	chr2:7184600-7185800	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr2:7184600-7186000	Strong transcription	Fetal Brain Female	brain
44	chr2:7184600-7186600	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr2:7184600-7194000	Weak transcription	Colon Smooth Muscle	Colon
46	chr2:7184800-7185600	Weak transcription	Thymus	Thymus
47	chr2:7184800-7185800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr2:7184800-7185800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:7184800-7185800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:7184800-7186200	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links