Variant report

Variant	rs560264538
Chromosome Location	chr15:41582315-41582316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41581933..41584889-chr15:41587370..41590303,3	K562	blood:
2	chr15:41581502..41583044-chr15:41584915..41586594,2	K562	blood:
3	chr15:41579631..41582972-chr15:41599254..41603170,4	K562	blood:
4	chr15:41581131..41583433-chr15:41618949..41620567,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	esv3353891	chr15:41581060-41583108	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577000-41582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:41577400-41584600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
5	chr15:41577800-41583600	Weak transcription	Aorta	Aorta
6	chr15:41577800-41583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:41577800-41589000	Weak transcription	Esophagus	oesophagus
8	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:41578000-41582400	Genic enhancers	Liver	Liver
10	chr15:41578000-41584000	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr15:41578000-41584000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:41578000-41584600	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr15:41578000-41584600	Strong transcription	Fetal Intestine Large	intestine
14	chr15:41578000-41588400	Weak transcription	Right Atrium	heart
15	chr15:41578000-41591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:41578200-41591800	Strong transcription	Fetal Stomach	stomach
17	chr15:41578200-41592600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:41578400-41592600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:41578800-41582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:41578800-41584400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:41578800-41587800	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:41578800-41591800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:41579200-41584800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:41579200-41584800	Strong transcription	K562	blood
25	chr15:41579200-41593200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:41579200-41612400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:41580000-41592600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:41580600-41583200	Strong transcription	Fetal Thymus	thymus
29	chr15:41580600-41584800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr15:41580600-41603200	Weak transcription	Psoas Muscle	Psoas
31	chr15:41580800-41584000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:41581000-41586400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:41581000-41588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:41581000-41590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:41581000-41593200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:41581200-41582400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:41581200-41582600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:41581200-41582800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:41581200-41582800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:41581200-41582800	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:41581200-41583000	Weak transcription	Adipose Nuclei	Adipose
42	chr15:41581200-41583000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:41581200-41583400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:41581200-41583400	Weak transcription	Right Ventricle	heart
45	chr15:41581200-41583400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:41581200-41584200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:41581200-41584200	Strong transcription	Fetal Brain Female	brain
48	chr15:41581200-41584600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:41581200-41585000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:41581200-41585000	Strong transcription	Rectal Mucosa Donor 29	rectum

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