Variant report

Variant	rs56026490
Chromosome Location	chr4:148504101-148504102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10519904	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58439954	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61170156	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62342648	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62342651	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148499400-148507400	Weak transcription	NHDF-Ad	bronchial
2	chr4:148499600-148504400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:148500000-148510800	Weak transcription	Ovary	ovary
4	chr4:148500200-148505000	Weak transcription	HUVEC	blood vessel
5	chr4:148501600-148505200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:148501600-148505400	Enhancers	HMEC	breast
7	chr4:148501800-148505400	Enhancers	Hela-S3	cervix
8	chr4:148502200-148505400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:148502800-148504400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:148502800-148505000	Enhancers	NHEK	skin
11	chr4:148503400-148504200	Enhancers	Stomach Mucosa	stomach
12	chr4:148503400-148507400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:148503600-148510800	Weak transcription	HSMM	muscle
14	chr4:148503600-148510800	Weak transcription	Osteobl	bone
15	chr4:148503800-148505000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:148503800-148508400	Weak transcription	NHLF	lung
17	chr4:148503800-148510800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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