Variant report

Variant	rs61170156
Chromosome Location	chr4:148508838-148508839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10519904	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026490	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58439954	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62342648	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62342651	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148500000-148510800	Weak transcription	Ovary	ovary
2	chr4:148503600-148510800	Weak transcription	HSMM	muscle
3	chr4:148503600-148510800	Weak transcription	Osteobl	bone
4	chr4:148503800-148510800	Weak transcription	HSMMtube	muscle
5	chr4:148505400-148509400	Weak transcription	Hela-S3	cervix
6	chr4:148506600-148510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:148507000-148509200	Enhancers	Brain Substantia Nigra	brain
8	chr4:148507200-148511400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:148507400-148509000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:148507400-148509200	Enhancers	Brain Anterior Caudate	brain
11	chr4:148507400-148510400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:148507400-148510800	Weak transcription	Fetal Stomach	stomach
13	chr4:148507600-148510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:148507800-148509200	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:148508600-148510600	Weak transcription	NHDF-Ad	bronchial
16	chr4:148508600-148510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:148508600-148510800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:148508800-148509000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:148508800-148509000	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr4:148508800-148510600	Weak transcription	Fetal Lung	lung
21	chr4:148508800-148510800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:148508800-148510800	Weak transcription	NHLF	lung

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