Variant report

Variant	rs56028632
Chromosome Location	chr3:56732617-56732618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56715683..56718669-chr3:56731865..56734737,3	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10222629	0.82[ASN][1000 genomes]
rs1054092	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1054093	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130542	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11719707	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11719726	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1316647	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13317989	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1565378	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1873256	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2291498	0.82[ASN][1000 genomes]
rs2291500	0.82[ASN][1000 genomes]
rs3172355	0.82[ASN][1000 genomes]
rs4681726	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4681736	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4681738	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4681739	0.85[ASN][1000 genomes]
rs4681937	0.82[ASN][1000 genomes]
rs4681955	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682001	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682002	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682008	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55742226	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55828519	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56172256	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56263252	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62251234	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6445811	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6445812	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6767903	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6794450	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72624856	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7612464	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7620896	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7633478	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641898	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7645941	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7647095	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7648297	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7649872	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs873840	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9311609	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9311612	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs953540	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9809117	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9809741	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9814014	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9816100	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9816265	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9819952	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9826788	0.83[ASN][1000 genomes]
rs9830377	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9834239	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9835134	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9847362	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9861577	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9864701	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9867302	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9868059	0.82[ASN][1000 genomes]
rs9871265	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9872059	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9883842	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56028632	CCDC66	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56725800-56734000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:56726000-56734000	Weak transcription	NHEK	skin
3	chr3:56728000-56733000	Weak transcription	Placenta	Placenta
4	chr3:56729800-56738600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:56730000-56733000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:56730000-56738600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:56730400-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:56731000-56736400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:56731000-56736400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:56731000-56736400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:56731000-56736800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:56731000-56736800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:56731200-56734000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:56731200-56734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:56731200-56736400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:56731200-56736400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:56731200-56738600	Weak transcription	Primary T cells from cord blood	blood
18	chr3:56731200-56738600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:56731200-56738600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links