Variant report

Variant rs560289
Chromosome Location chr17:18314142-18314143
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:18306800-18314200 Weak transcription GM12878-XiMat blood
2 chr17:18312200-18314400 Enhancers Primary T cells from cord blood blood
3 chr17:18312400-18314200 Weak transcription Primary hematopoietic stem cells blood
4 chr17:18312400-18314200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr17:18312400-18314200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr17:18312600-18314200 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr17:18312600-18314200 Weak transcription Primary T killer naive cells fromperipheralblood blood
8 chr17:18312600-18314200 Weak transcription Brain Cingulate Gyrus brain
9 chr17:18312600-18315400 Active TSS Brain Germinal Matrix brain
10 chr17:18312800-18314800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr17:18313000-18314200 Weak transcription Primary B cells from peripheral blood blood
12 chr17:18313000-18314200 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr17:18313000-18314200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr17:18313000-18314200 Weak transcription Monocytes-CD14+_RO01746 blood
15 chr17:18313000-18315400 Active TSS Fetal Brain Female brain
16 chr17:18313000-18315400 Active TSS Fetal Stomach stomach
17 chr17:18313200-18314200 Weak transcription Brain Substantia Nigra brain
18 chr17:18313200-18315400 Active TSS Fetal Thymus thymus
19 chr17:18313400-18315400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr17:18313400-18315400 Active TSS HUES6 Cell Line embryonic stem cell
21 chr17:18313400-18315400 Active TSS iPS-15b Cell Line embryonic stem cell
22 chr17:18313400-18315400 Active TSS iPS-20b Cell Line embryonic stem cell
23 chr17:18313400-18315400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
24 chr17:18313400-18315400 Active TSS Thymus Thymus
25 chr17:18313600-18314400 Flanking Active TSS Dnd41 blood
26 chr17:18313600-18315400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr17:18313600-18315400 Active TSS HUES64 Cell Line embryonic stem cell
28 chr17:18313600-18315400 Active TSS A549 lung
29 chr17:18313600-18315400 Active TSS NH-A brain
30 chr17:18313800-18314200 Enhancers Primary monocytes fromperipheralblood blood
31 chr17:18313800-18314200 Enhancers Primary T cells fromperipheralblood blood
32 chr17:18313800-18314200 Enhancers Primary T helper cells fromperipheralblood blood
33 chr17:18313800-18315200 Active TSS Colon Smooth Muscle Colon
34 chr17:18313800-18315200 Active TSS Fetal Brain Male brain
35 chr17:18313800-18315400 Active TSS ES-I3 Cell Line embryonic stem cell
36 chr17:18313800-18315400 Active TSS H9 Cell Line embryonic stem cell
37 chr17:18313800-18315400 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr17:18313800-18315400 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
39 chr17:18313800-18315400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
40 chr17:18313800-18315400 Active TSS iPS-18 Cell Line embryonic stem cell
41 chr17:18313800-18315400 Active TSS ES-UCSF4 Cell Line embryonic stem cell
42 chr17:18313800-18315400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr17:18313800-18315400 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr17:18313800-18315400 Active TSS Cortex derived primary cultured neurospheres brain
45 chr17:18313800-18315400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
46 chr17:18313800-18315400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
47 chr17:18313800-18315400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr17:18313800-18315400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
49 chr17:18313800-18315400 Active TSS Adipose Nuclei Adipose
50 chr17:18313800-18315400 Active TSS Fetal Intestine Small intestine

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